Glioblastoma Response Prediction and Tumor and Organ-at-Risk Segmentation with Radiomics and Deep Learning
Author Block: A. Mora Rubio1, C. Bravo Vergara1, M. Beser-Robles1, G. Ribas1, P. Garcia Verdu1, I. Popp2, A. L. Grosu2, L. Marti-Bonmati1, M. Carles Fariña1; 1Valencia/ES, 2Freiburg/DE
Purpose: The current standard treatment for Glioblastoma Multiforme (GBM) involves radiation therapy (RT) and requires manual tumour segmentation, which is labour-intensive and susceptible to inter-observer variability. Additionally, given the high recurrence rate of GBM patients, accurate response prediction methods can help to improve patient prognosis stratification and optimize treatment plans. The aim of this study is to develop and evaluate automatic segmentation methods based on deep learning and assess the ability of mathematical models employing clinical and radiomics features (RF) to improve the accuracy of response prediction.
Methods or Background: The study included 253 patients with primary/recurrent GBM, prospectively (185) and a retrospectively recruited in 13 institutions. The open-source cohort BraTS2021 of primary glioma patients was also used. The nnU-Net open-source framework was used to develop models for Enhancing Tumour, Peritumoral Edema, RT Planning Target Volume and six Organs-at-Risk, based on segmentation performed by neuroradiologist and radiation oncologist. For response prediction in recurrent GBM of the prospective cohort, the Cox Proportional Hazard and Logistic Regression models for overall survival, time to progression, and early recurrence prediction, were applied.
Results or Findings: The segmentation models achieved good to excellent performance, with average DSC scores in the test set of 0.79 (0.69-0.98). Clinical and MR-RF showed significant discrimination between patients with early and late progression on validation and test sets (p < 0.05 in Kaplan-Meier curves). Wavelet transform RF and clinical features like age, methylation status, and tumour localisation were notably significant predictors.
Conclusion: The good performance of the automatic segmentation models supports their use in clinical workflows to simplify procedures, reduce time investment, and increase robustness. Radiomics analysis suggested that the MR-RF model has potential for predicting time to progression.
Limitations: Ongoing work is about the FET-PET complementary information.
Funding for this study: This work was supported by the MATTO-GBM Project under the European TRANSCAN-3 ERA-NET 2022 Program, funded by ISCIII (AC23_1/00012), FAECC (TRANSCAN2022-784-104), and the European Union through the Next Generation EU Funds. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
Has your study been approved by an ethics committee? Yes
Ethics committee - additional information: All patients gave written informed consent according to institutional and federal guidelines. All study protocols were approved by the corresponding ethics committee.